PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG393800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 284aa    MW: 30213.9 Da    PI: 6.5164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG393800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09105150454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er RRd++  +f  Lr  +P+      ++++K + L  A+ YI +L
  Pavir.6KG393800.1.p 105 SHMEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKTSLLADATAYIAEL 150
                          899***********************8.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.268101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-7104155No hitNo description
SuperFamilySSF474593.79E-14104166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13105164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-8107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDEHGRPTSS TSSPPSPASF FSAASNGGVL EFPYTEVPEQ WLMDDDDSNV QEQRLLEHGA  60
VWGDDGALLS ARSADLSSRN PPAAAATKRG RKPPGPRAGG GPAVSHMEAE RHRRDKLHRR  120
FCDLRAAVPN VTRMDKTSLL ADATAYIAEL RARVEQLEAE ARRAAAARKA NRPFFVADAA  180
AAAAAAAAPA GSFDFELGEE EKLEVRMVVG REAAATLRLT TAARHGPARL MDALRSLDLP  240
VLHACACRVG GVTVQDAVVD VPAELRDADC LRAALLHRLQ ESG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282813e-46KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974091.11e-111PREDICTED: transcription factor bHLH14-like
TrEMBLK3YJ221e-111K3YJ22_SETIT; Uncharacterized protein
STRINGSi014241m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-14bHLH family protein